logo
down
shadow

NetLogo 5.3.1 and R 3.3.1 on Mac 10.10.6 headless exception


NetLogo 5.3.1 and R 3.3.1 on Mac 10.10.6 headless exception

By : sam
Date : November 20 2020, 11:01 PM
it helps some times As someone commented (I really don't know why they didn't post the answer) the key to the problem was I was using the wrong package to start NetLogo.
First of all one have to be sure that R has the correct Java Home set. So run this on mac shell.
code :
R CMD javareconf
install.packages("rJava", type="source", repos="http://cran.us.r-project.org”) 
install.packages("JGR")
require(JGR)    
### Start JGR 
JGR()
### call netlogo. Set the path where NetLogo is installed
nl.path <- ("/Applications/NetLogo 5.3.1/") # Mac path

### Start NetLogo 
    # The /Java directory is where the NetLogo java app lives. Don't set 
    # completely before to make the models path work     
NLStart(file.path(nl.path, "Java")) 


Share : facebook icon twitter icon
Netlogo headless on HPC machine error

Netlogo headless on HPC machine error


By : user3152854
Date : March 29 2020, 07:55 AM
this one helps. My runninfg netlogo headless on google compute, can someone please help me with this error: , You're missing a space after k-e but before the \.
Netlogo Headless error

Netlogo Headless error


By : dmlvrw
Date : March 29 2020, 07:55 AM
Any of those help change the memory size setting in netlogo batch file may solve this issue. as the default low of maximum memory is low, this issue usually happens when you hae a simulation with large quantity of agents.
change it to 1024M is what i did before. try to make your own script and submit it with local modified netlogo batch instead using the standard version provided by hpc.
NetLogo netlogo-headless.sh file location

NetLogo netlogo-headless.sh file location


By : attia fatima
Date : March 29 2020, 07:55 AM
I wish this helpful for you netlogo-headless.sh was inadvertently removed from the Linux install in 5.3.0: https://github.com/NetLogo/NetLogo/issues/979
For now, you can use 5.2.1.
Get NetLogo widgets in headless mode

Get NetLogo widgets in headless mode


By : Henrique Umbelino
Date : March 29 2020, 07:55 AM
will be helpful for those in need Mike Horn solved this by parsing through the .nlogo file in his NetTango project. If you're okay with that, take a look at his Model.java load() method, and initSlider(), initSwitch(), and initPlot() methods. I don't remember the exact relative line location of default value for the other widget types, but if you open a .nlogo file in a text editor, you should be able to figure it out.
how to fix JNI error in netlogo headless mode?

how to fix JNI error in netlogo headless mode?


By : Farid
Date : March 29 2020, 07:55 AM
it fixes the issue it finally solved when i run the code in the app directory (where NetLogo.jar is) of the NetLogo installation.
Related Posts Related Posts :
  • Extract single plot from ggplot with facet_grid
  • R: Subtract values from rows based on another column
  • Data Frame Transcode 1-0
  • Why can't we use . as a parameter in an anonymous function with %>%
  • How does R reference unassigned values?
  • How to interpret ACF plot y-axis scale in R
  • Naming resulting data.table columns after aggregation in R
  • can't write timestamps in PostgreSQL using RPostgres dbWriteTable
  • Why doesn't "mar" argument to plot.default get used?
  • How to extract dimension of a submatrix from a bigger matrix using R?
  • Area estimation using image in R
  • Building a symmetric binary matrix
  • Change color and add shape to lines on ggplot2 geom_freqpoly
  • Count event occurrence and assign it to individuals according to date and place of interview
  • ggplot2 is mutating/transforming size variables -- how to get back original data?
  • How to output literal backticks in knitr::spin
  • geom_text how to position the text on bar as I want?
  • How to escape the symbol of percentage '%' in r?
  • How to get R plot to plot variable on heat.color scale
  • Dynamically selecting principal components from the PCA output
  • Replicate a regression using a random subset of data each time and check distribution of regression coefficients?
  • How to find a string in a vector in r?
  • How to replace outliers with NA having a particular range of values in R?
  • rearrange data: convert from water year to calendar year
  • Plot multiple graphs on one plot in R within loop
  • Unconditional Probability Calculation in R
  • Calculate & add column length_of_time from date column in R
  • Asterisk in ggplot's annotate()
  • How to copy a row from a data frame to a matrix in R?
  • Importing a similar column (eg. pH column) from 60 csv files thru use of loop and making a matrix .
  • Reading text file with multi-char delimiter to a list in R
  • ggplot2 scale colours for heatmap
  • Looking to save a 3D spectrograph generated by SeeWave as .STL or similar in R
  • Separating three dimensional array by the stratifying variable
  • "Object '...' not found when referenced object is a nested function in R
  • How to correctly clearShapes in Leaflet in a Shiny app
  • Extract unique values from column in dataframe, grouped by ID
  • Stacked Bar Chat (ggplot) in R:: Trying to create more than one bar in the chart
  • R: Creating a function to merge two columns
  • Error in knearest(Darr, P_set, K) : object 'knD' not found
  • Determining least significant predictor in Linear Regression Model with R
  • listcolumns and multidplyr
  • How to check for the presence of a location in a sentence in R?
  • Using mapply over a matrix when the function makes use of elemets' location in the matrix
  • R - stratified sampling for Person Period file
  • Merging two xts to create NAs at certain time stamps
  • How to subset data in a loop in R?
  • How to use sprintf to show string "\t"?
  • Subset Columns based on partial matching of column names in the same data frame
  • R Extract number from string
  • How to put 2 boxplot in one graph in R without additional libraries?
  • ggplot omits polygon holes
  • ggplot2 geom_boxplot side by side with facets
  • outlier labels incorrectly assigned with ggplot2 box plot
  • capture column pattern frequency
  • R remove tags starting with U
  • R, dplyr and snow: how to parallelize functions which use dplyr
  • R: Separate String Without Delimiter (like Fixed Width in Excel)
  • In R, is there a parsimonious or efficient way to get a regression prediction holding all covariates at their means?
  • Determine mode locations of the kernel density estimate of multimodal univariate data
  • shadow
    Privacy Policy - Terms - Contact Us © soohba.com