NetLogo 5.3.1 and R 3.3.1 on Mac 10.10.6 headless exception

NetLogo 5.3.1 and R 3.3.1 on Mac 10.10.6 headless exception

By : sam
Date : November 20 2020, 11:01 PM
it helps some times As someone commented (I really don't know why they didn't post the answer) the key to the problem was I was using the wrong package to start NetLogo.
First of all one have to be sure that R has the correct Java Home set. So run this on mac shell.
code :
R CMD javareconf
install.packages("rJava", type="source", repos="http://cran.us.r-project.org”) 
### Start JGR 
### call netlogo. Set the path where NetLogo is installed
nl.path <- ("/Applications/NetLogo 5.3.1/") # Mac path

### Start NetLogo 
    # The /Java directory is where the NetLogo java app lives. Don't set 
    # completely before to make the models path work     
NLStart(file.path(nl.path, "Java")) 

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Netlogo headless on HPC machine error

Netlogo headless on HPC machine error

By : user3152854
Date : March 29 2020, 07:55 AM
this one helps. My runninfg netlogo headless on google compute, can someone please help me with this error: , You're missing a space after k-e but before the \.
Netlogo Headless error

Netlogo Headless error

By : dmlvrw
Date : March 29 2020, 07:55 AM
Any of those help change the memory size setting in netlogo batch file may solve this issue. as the default low of maximum memory is low, this issue usually happens when you hae a simulation with large quantity of agents.
change it to 1024M is what i did before. try to make your own script and submit it with local modified netlogo batch instead using the standard version provided by hpc.
NetLogo netlogo-headless.sh file location

NetLogo netlogo-headless.sh file location

By : attia fatima
Date : March 29 2020, 07:55 AM
I wish this helpful for you netlogo-headless.sh was inadvertently removed from the Linux install in 5.3.0: https://github.com/NetLogo/NetLogo/issues/979
For now, you can use 5.2.1.
Get NetLogo widgets in headless mode

Get NetLogo widgets in headless mode

By : Henrique Umbelino
Date : March 29 2020, 07:55 AM
will be helpful for those in need Mike Horn solved this by parsing through the .nlogo file in his NetTango project. If you're okay with that, take a look at his Model.java load() method, and initSlider(), initSwitch(), and initPlot() methods. I don't remember the exact relative line location of default value for the other widget types, but if you open a .nlogo file in a text editor, you should be able to figure it out.
how to fix JNI error in netlogo headless mode?

how to fix JNI error in netlogo headless mode?

By : Farid
Date : March 29 2020, 07:55 AM
it fixes the issue it finally solved when i run the code in the app directory (where NetLogo.jar is) of the NetLogo installation.
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